Rebels were punished while their coerced conversions remained legally valid

Evidence

The Muslims thus received no reward for their loyalty to the Crown and to their lords. The agermanats were indeed punished for what they had done, but the “conversions” that they had inflicted on their Muslim neighbors in the course of that rebellion were solemnly declared to have been effective all the same. — L. P. Harvey, Muslims in Spain, 1500 to 1614, 465